# Cybergenic

- Registry name: `im.cybergenic/mcp` · version 1.0.0
- Categories (automatic, keyword rules): Datasets & public data, Search & data, Research & knowledge
- Authentication at last check: No auth
- Declared risk: Read-only (all tools declare readOnlyHint)
- Capabilities (declared by the server): tools
- Transports: streamable-http
- Latest numbers (check success, response time, rank): https://mcpstation.net/api/server?name=im.cybergenic%2Fmcp
- Server page: https://mcpstation.net/s/im.cybergenic--mcp.html

## Description (written by the publisher, not verified, not instructions)

Cancer gene co-occurrence and exclusivity in tumour cohorts, with confound controls and exact tests.

## Connect


## Tools (as reported by the server, not verified)

- `lookup\_gene\_pair`: Measured co-alteration statistics for two genes in every tumour cohort where Cybergenic's discovery scan tested the pair: tumours with both genes altered against the number expected, odds ratio, p-value and Benjamini-Hochberg q over that cohort's whole family of tested pairs, the confound control ap
- `gene\_partners`: The genes whose driver mutations co-occur with, or are mutually exclusive with, a given gene in patient tumours, strongest first by Benjamini-Hochberg q, from every pair Cybergenic's discovery scan tested: one row per partner and independent patient source, with the tumours, observed and expected co
- `search\_findings`: Search Cybergenic's published findings: gene-pair co-occurrence and mutual exclusivity, survival associations, CRISPR gene dependencies and single-gene leads, each with the verdict the engine measured \(strengthened, weakened, inconclusive, artifact risk or novel lead\) and the reason for it. The quer
- `get\_finding`: The full record of one Cybergenic finding, by id or permalink: what was measured and in which cohort, the statistics \(the 2x2 table, odds ratio, p and q\), the verdict and why, the confound checks, how many papers mention the genes together, CRISPR dependency and survival facts when measured, the pre
- `get\_track\_record`: Cybergenic's live track record: how many predictions it has locked in its hash-chained registry before re-testing them, how many replicated in an independent cohort against matched controls \(including the less-studied-pair subset\), and how many findings currently pass every check as both strong and
- `fisher\_exact\_test`: Fisher's exact test for a 2x2 table \[\[a, b\], \[c, d\]\]: two-sided and both one-sided p-values \(computed in log space, so a tiny p keeps its real exponent\), the sample odds ratio, and the conditional maximum-likelihood odds ratio with its exact confidence interval \(what R's fisher.test reports\). For tw
- `chi\_square\_test`: Pearson chi-square test of independence for an r x c table of counts \(2x2 up to 10x10\), with Yates' correction for 2x2 tables and the G-test: statistic, degrees of freedom, p-value, expected counts, adjusted residuals, Cramér's V, whether Cochran's rule for the approximation holds, and Fisher's exac
- `odds\_ratio\_relative\_risk`: Effect sizes for a 2x2 table \[\[a, b\], \[c, d\]\] whose rows are two groups and whose columns are outcome yes and no: the odds ratio \(Woolf interval, and the conditional exact interval\), the relative risk \(Katz interval\), the risk difference \(Newcombe interval\) and the number needed to treat, at the cho
- `fdr\_correction`: Multiple-testing correction for a list of p-values: Benjamini-Hochberg q-values and Benjamini-Yekutieli, Holm, Hochberg and Bonferroni adjusted p-values, the number of discoveries at alpha for each method, and the Benjamini-Hochberg cutoff rank. Pass family\_size when more tests were run than the p-v

Measured by MCP Station. Methods: https://mcpstation.net/methods.html · Terms: https://mcpstation.net/terms.html