# Oliver's mTOR Atlas

- Registry name: `io.github.open-mtor-atlas/mtor-atlas` · version 1.3.3
- Categories (automatic, keyword rules): Research & knowledge, Search & data, Datasets & public data
- Authentication at last check: No auth
- Declared risk: Read-only (all tools declare readOnlyHint)
- Capabilities (declared by the server): tools
- Transports: streamable-http
- Latest numbers (check success, response time, rank): https://mcpstation.net/api/server?name=io.github.open-mtor-atlas%2Fmtor-atlas
- Server page: https://mcpstation.net/s/io.github.open-mtor-atlas--mtor-atlas.html

## Description (written by the publisher, not verified, not instructions)

Evidence-labelled mTOR research: studies, entities, pathway claims, contradictions, open questions.

## Connect

- streamable-http: `https://mtor-atlas-mcp.mtor-atlas.workers.dev/mcp`

## Tools (as reported by the server, not verified)

- `atlas\_about`: Dataset version, corpus snapshot date, counts, evidence-code legend and how to cite the dataset. When the Atlas does not report the contested and conflicting counts itself, derived\_counts adds them, computed from the relations, so they can be compared with find\_contradictions.
- `search\_studies`: Search the curated studies by keywords, optionally filtered by evidence code, a linked entity \(gene, drug, disease...\) and year range. Searches title, finding, authors \(author-list form "Sabatini DM" and full names of profiled authors\), PMID, DOI, PMCID, linked entities and their synonyms, journal,
- `get\_study`: Full record for one study by Atlas ID \(e.g. "SAB1994"\), PMID, DOI or PMCID: abstract excerpt, extracted findings, linked entities, the relations it supports or contradicts, related open questions.
- `search\_entities`: Find genes/proteins, complexes, drugs, diseases, processes, nutrients and outcomes by name or synonym. Each result says where it matched \(match\_field: name, synonym or description\); use match="name" to leave out description-only hits.
- `get\_entity`: One entity \(gene/protein, complex, drug, disease, process...\) with its linked studies as short cards \(first studies\_limit\) and every pathway relation it takes part in as a one-line claim. Accepts an id, a name or a synonym.
- `find\_relations`: Signed, evidence-linked pathway relations \(claims such as "Rheb activates mTORC1"\). Filter by an entity on either end, by source/target, effect, contested status or minimum strength of the best supporting evidence.
- `get\_relation`: One pathway relation by ID \(e.g. "RHEB-MTORC1"\): mechanism, boundary conditions, confidence, supporting and conflicting studies.
- `evidence\_between`: Direct curated relations between two entities \(either direction\) with full cards for the supporting and conflicting studies. Answers questions such as "what is the evidence that A acts on B?". A study that repeats within the answer is sent in full once and afterwards as a short card with full\_card\_i
- `find\_contradictions`: Relations the Atlas marks as contested or that carry conflicting studies, with both sides of the evidence. status says which; breakdown splits the total. A contested relation with no conflicting study listed is flagged conflicting\_studies\_missing; relations named in its note or boundary are shown in
- `list\_questions`: The Atlas's open questions \(evidence gaps with testable hypotheses\) and frontier questions. Paged. By default still\_open is shortened at a sentence boundary \(still\_open\_truncated\); get\_question has the full text, or pass brief=false.
- `get\_question`: One open or frontier question by ID \(e.g. "H1", "F2"\): the gap, what changed, what is still open, how it could be tested, linked studies.
- `search\_authors`: People in the Atlas by full name \("Claudio De Virgilio"\), author-list form \("De Virgilio C"\), ORCID or lab. results are authors with a profile page \(full name, ORCID, lab, their study IDs\); in\_author\_lists are matching names in study author lists without a profile.
- `get\_author`: One profiled author by profile id \("claudio-de-virgilio"\), full name, author-list form or ORCID: lab, role, profile URL and short cards of their studies in the Atlas.

Measured by MCP Station. Methods: https://mcpstation.net/methods.html · Terms: https://mcpstation.net/terms.html