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com.tomesphere/tomesphere

com.tomesphere/tomesphere · v0.1.0

No registry update 90+ days

Measured by MCP Station

Last check	Reachable
Checked at	—
Check success 7 / 30 days	—
First-try success 30 days	—
Median response	—
Lookups 30 days	—
Authentication	No auth
MCP version	2025-03-26
Rank score	—
Declared risk	Read-only (all tools declare readOnlyHint)
Capabilities declared	tools
Tool definitions	9 tools · with description 100% · input schema is an object 100% · read/destructive hints 100%

Description written by the publisher, not verified

Search 8.5M scientific papers with LLM TLDRs, citations, linked entities, figures, and full text.

Connect

streamable-http · https://mcp.tomesphere.com/api/mcp

claude mcp add --transport http tomesphere https://mcp.tomesphere.com/api/mcp

{
  "mcpServers": {
    "tomesphere": {
      "url": "https://mcp.tomesphere.com/api/mcp"
    }
  }
}

Tools as reported by the server

search_papers
Search 8.5 million academic papers (arXiv + biomedical: PMC / bioRxiv / medRxiv, all disciplines) by topic, keyword, author, or linked entity (gene / protein / disease). Each hit returns id, title, TLDR, type, and links. Use to find papers about a topic, e.g. 'transformer efficiency' or 'CRISPR base
get_paper
Fetch a paper's full metadata: title, authors, year, abstract, TLDR (LLM-generated), key findings, citation count, GitHub repos, HuggingFace models/datasets, videos, peer reviews, and links. Accepts an arXiv ID (e.g. '2401.12345' or '1706.03762v5') or an OpenAlex Work ID (e.g. 'W4390723197'). Use wh
similar_papers
Find papers semantically similar to a given paper using SPECTER2 embeddings (trained on scientific-citation triplets). Returns nearest neighbors with TLDR. Use when the user wants 'papers like X' or 'what's adjacent to this work'.
citations
Get papers that cite the given paper (who refers to this work). Use when the user asks 'who cites X', 'what's the impact', or wants follow-up work. Note: 2024+ citation coverage is sparse; indexing in progress.
references
Get the papers that this paper cites (its bibliography). Use when the user asks 'what does X cite' or 'show me the references'.
get_full_text
Fetch a paper's full body text as Markdown (methods, results, protocols, inline tables) — use for deep questions the abstract can't answer. Accepts an arXiv ID (2401.12345), a PMC ID (PMC5339222), or a bioRxiv/medRxiv DOI (10.1101/…).
get_figures
Get a paper's real figure images — URLs, labels, and captions. Most biomedical papers have figures; arXiv papers often don't. Accepts an arXiv ID, PMC ID, or bioRxiv/medRxiv DOI.
get_entities
Get the biomedical entities linked to a paper: genes, proteins, chemicals, diseases, species, mutations, cell lines, and clinical-trial (NCT) IDs. Accepts an arXiv ID, PMC ID, or bioRxiv/medRxiv DOI.
get_structure
Resolve a gene/protein name (e.g. 'TP53', 'CD44') or UniProt accession to its 3D structure — returns the UniProt accession + AlphaFold model URL (and PDB when available). Great for a gene named in a paper's entities.

Website · JSON · Text for agents · Registry updated 2026-07-06